Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heavy-metal-associated domain-containing protein | E5284_RS13935 | Not Available | Negative | 2903438 - 2903719 | 10239.7 |
| mercuric transporter mert family protein | E5284_RS13940 | Not Available | Negative | 2903716 - 2904072 | 13200.7 |
| transglutaminase-like domain-containing protein | E5284_RS13945 | Not Available | Negative | 2904050 - 2905192 | 42312.3 |
| srpbcc family protein | E5284_RS13950 | Not Available | Negative | 2905432 - 2905902 | 18165.8 |
| duf1571 domain-containing protein | E5284_RS13955 | Not Available | Negative | 2905916 - 2906437 | 19271.3 |
| hypothetical protein | E5284_RS13960 | Not Available | Positive | 2906807 - 2907151 | 12685.2 |
| hypothetical protein | E5284_RS13965 | Not Available | Negative | 2907361 - 2908560 | 43935.4 |
| dini family protein | E5284_RS13970 | Not Available | Positive | 2908905 - 2909147 | 9295.21 |
| Trna-leu | Not Available | Not Available | Positive | 2909485 - 2909571 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 2909584 - 2909657 | Not Available |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

