Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dj-1/pfpi family protein | E5284_RS13885 | Not Available | Negative | 2895536 - 2896093 | 19922.9 |
| non-heme ferritin-like protein | E5284_RS13890 | Not Available | Positive | 2896595 - 2897098 | 18915.4 |
| duf2766 family protein | E5284_RS13895 | Not Available | Negative | 2897179 - 2897430 | 9088.02 |
| mfs transporter | E5284_RS13900 | Not Available | Positive | 2897558 - 2898979 | 50599.4 |
| rpib/laca/lacb family sugar-phosphate isomerase | E5284_RS13905 | Not Available | Negative | 2899014 - 2899652 | 23177.9 |
| yecr-like lipofamily protein | E5284_RS13910 | Not Available | Positive | 2899922 - 2900257 | 11840.4 |
| non-heme ferritin | E5284_RS13915 | Not Available | Positive | 2900451 - 2900948 | 19299.8 |
| yech family metal-binding protein | E5284_RS13920 | Not Available | Negative | 2900994 - 2901233 | 8646.19 |
| tyrosine transporter tyrp | E5284_RS13925 | Not Available | Positive | 2901447 - 2902658 | 42749.6 |
| yeca family protein | E5284_RS13930 | Not Available | Negative | 2902688 - 2903353 | 24955.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

