Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar motor protein motb | E5284_RS13835 | Not Available | Negative | 2885148 - 2886077 | 34135.0 |
| flagellar motor stator protein mota | E5284_RS13840 | Not Available | Negative | 2886074 - 2886961 | 32032.5 |
| flagellar transcriptional regulator flhc | E5284_RS13845 | Not Available | Negative | 2887087 - 2887665 | 21484.2 |
| flagellar transcriptional regulator flhd | E5284_RS13850 | Not Available | Negative | 2887668 - 2888009 | 12938.7 |
| universal stress protein uspc | E5284_RS13855 | Not Available | Positive | 2888802 - 2889230 | 15734.9 |
| alpha,alpha-trehalose-phosphate synthase | E5284_RS13860 | Not Available | Negative | 2889248 - 2890669 | 53780.0 |
| trehalose-phosphatase | E5284_RS13865 | Not Available | Negative | 2890644 - 2891447 | 29252.1 |
| l-arabinose abc transporter permease arah | E5284_RS13870 | Not Available | Negative | 2891600 - 2892586 | 34261.2 |
| l-arabinose abc transporter atp-binding protein arag | E5284_RS13875 | Not Available | Negative | 2892601 - 2894115 | 55180.0 |
| arabinose abc transporter substrate-binding protein | E5284_RS13880 | Not Available | Negative | 2894230 - 2895219 | 35342.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

