Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc abc transporter atp-binding protein znuc | E5284_RS13680 | Not Available | Positive | 2853101 - 2853856 | 27775.2 |
| zinc abc transporter permease subunit znub | E5284_RS13685 | Not Available | Positive | 2853853 - 2854638 | 27809.5 |
| holliday junction branch migration dna helicase ruvb | E5284_RS13690 | Not Available | Negative | 2854726 - 2855736 | 37177.1 |
| holliday junction branch migration protein ruva | E5284_RS13695 | Not Available | Negative | 2855745 - 2856356 | 22101.1 |
| crossover junction endodeoxyribonuclease ruvc | E5284_RS13700 | Not Available | Negative | 2856438 - 2856959 | 18763.9 |
| yebc/pmpr family dna-binding transcriptional regulator | E5284_RS13705 | Not Available | Negative | 2856994 - 2857737 | 26595.1 |
| dihydroneopterin triphosphate diphosphatase | E5284_RS13710 | Not Available | Negative | 2857766 - 2858209 | 17052.2 |
| aspartate--trna ligase | E5284_RS13715 | Not Available | Negative | 2858211 - 2859983 | 65692.8 |
| hydrolase | E5284_RS13725 | Not Available | Positive | 2860248 - 2860814 | 20312.2 |
| duf72 domain-containing protein | E5284_RS13730 | Not Available | Positive | 2860811 - 2861629 | 31246.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

