Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-phenylacetyl-coa epoxidase subunit paaa | E5284_RS13625 | Not Available | Negative | 2839244 - 2840173 | 35130.6 |
| phenylacetic acid degradation bifunctional protein paaz | E5284_RS13630 | Not Available | Positive | 2840459 - 2842504 | 73137.8 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | E5284_RS13635 | Not Available | Negative | 2842552 - 2843193 | 22232.2 |
| phosphogluconate dehydratase | E5284_RS13640 | Not Available | Negative | 2843230 - 2845041 | 64671.0 |
| glucose-6-phosphate dehydrogenase | E5284_RS13645 | Not Available | Negative | 2845276 - 2846751 | 55838.6 |
| murr/rpir family transcriptional regulator | E5284_RS13655 | Not Available | Positive | 2847117 - 2847986 | 32107.6 |
| pyruvate kinase | E5284_RS13660 | Not Available | Positive | 2848108 - 2849550 | 51438.3 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | E5284_RS13665 | Not Available | Negative | 2849652 - 2850623 | 37325.5 |
| murein dd-endopeptidase mepm | E5284_RS13670 | Not Available | Negative | 2850743 - 2852062 | 48924.4 |
| zinc abc transporter substrate-binding protein znua | E5284_RS13675 | Not Available | Negative | 2852078 - 2853022 | 34213.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

