Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate--coa ligase paak | E5284_RS13575 | Not Available | Negative | 2830655 - 2831965 | 48556.1 |
| 3-oxoadipyl-coa thiolase | E5284_RS13580 | Not Available | Negative | 2831994 - 2833199 | 42324.0 |
| hydroxyphenylacetyl-coa thioesterase paai | E5284_RS13585 | Not Available | Negative | 2833199 - 2833621 | 15103.2 |
| 3-hydroxyacyl-coa dehydrogenase | E5284_RS13590 | Not Available | Negative | 2833614 - 2835032 | 50844.1 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paag | E5284_RS13595 | Not Available | Negative | 2835036 - 2835824 | 28237.0 |
| 2,3-dehydroadipyl-coa hydratase paaf | E5284_RS13600 | Not Available | Negative | 2835827 - 2836594 | 27431.1 |
| 1,2-phenylacetyl-coa epoxidase subunit paae | E5284_RS13605 | Not Available | Negative | 2836591 - 2837661 | 38921.5 |
| 1,2-phenylacetyl-coa epoxidase subunit paad | E5284_RS13610 | Not Available | Negative | 2837669 - 2838169 | 18426.1 |
| 1,2-phenylacetyl-coa epoxidase subunit paac | E5284_RS13615 | Not Available | Negative | 2838182 - 2838937 | 28004.3 |
| 1,2-phenylacetyl-coa epoxidase subunit paab | E5284_RS13620 | Not Available | Negative | 2838945 - 2839232 | 10892.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

