Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone dehydrogenase | E5284_RS13525 | Not Available | Negative | 2821015 - 2822319 | 47248.5 |
| alpha/beta hydrolase ycfp | E5284_RS13530 | Not Available | Negative | 2822558 - 2823100 | 21129.2 |
| beta-n-acetylhexosaminidase | E5284_RS13535 | Not Available | Negative | 2823121 - 2824146 | 37547.6 |
| thiamine kinase | E5284_RS13540 | Not Available | Negative | 2824157 - 2824981 | 32580.1 |
| penicillin-binding protein activator lpob | E5284_RS13545 | Not Available | Negative | 2824962 - 2825603 | 22600.2 |
| ycfl family protein | E5284_RS13550 | Not Available | Negative | 2825617 - 2825991 | 13723.5 |
| purine nucleoside phosphoramidase | E5284_RS13555 | Not Available | Negative | 2825994 - 2826353 | 13258.2 |
| ferric-rhodotorulic acid/ferric-coprogen receptor fhue | E5284_RS13560 | Not Available | Positive | 2826704 - 2828893 | 81191.6 |
| phenylacetic acid degradation protein paay | E5284_RS13565 | Not Available | Negative | 2828963 - 2829559 | 21306.7 |
| phenylacetic acid degradation operon negative regulatory protein paax | E5284_RS13570 | Not Available | Negative | 2829571 - 2830497 | 34495.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

