Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like domain-containing protein | E5284_RS13105 | Not Available | Negative | 2749776 - 2750273 | 18383.1 |
| general stress protein | E5284_RS13110 | Not Available | Negative | 2750366 - 2750551 | 6297.96 |
| two-component system sensor histidine kinase phoq | E5284_RS13435 | Not Available | Positive | 2799759 - 2801222 | 55523.9 |
| [50s ribosomal protein l16]-arginine 3-hydroxylase | E5284_RS13440 | Not Available | Positive | 2801311 - 2802432 | 42685.4 |
| peptidase t | E5284_RS13445 | Not Available | Negative | 2802538 - 2803764 | 44685.8 |
| spermidine/putrescine abc transporter atp-binding protein pota | E5284_RS13450 | Not Available | Positive | 2804015 - 2805151 | 43053.7 |
| spermidine/putrescine abc transporter permease potb | E5284_RS13455 | Not Available | Positive | 2805135 - 2805992 | 32270.3 |
| spermidine/putrescine abc transporter permease potc | E5284_RS13460 | Not Available | Positive | 2805989 - 2806768 | 28526.2 |
| spermidine/putrescine abc transporter substrate-binding protein potd | E5284_RS13465 | Not Available | Positive | 2806923 - 2807969 | 39020.2 |
| sir2 family nad+-dependent deacetylase | E5284_RS13470 | Not Available | Negative | 2808072 - 2808893 | 30978.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

