Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase | E5284_RS13055 | Not Available | Positive | 2742593 - 2743054 | 17393.8 |
| trna 2-thiouridine(34) synthase mnma | E5284_RS13060 | Not Available | Positive | 2743108 - 2744214 | 41012.8 |
| high frequency lysogenization protein hfld | E5284_RS13065 | Not Available | Positive | 2744250 - 2744891 | 22937.0 |
| adenylosuccinate lyase | E5284_RS13070 | Not Available | Positive | 2744895 - 2746265 | 51559.7 |
| hypothetical protein | E5284_RS13075 | Not Available | Positive | 2746578 - 2746841 | 9928.01 |
| ydei family stress tolerance ob fold protein | E5284_RS13080 | Not Available | Negative | 2747180 - 2747575 | 14423.4 |
| hypothetical protein | E5284_RS13085 | Not Available | Positive | 2747713 - 2748219 | 19173.9 |
| duf421 domain-containing protein | E5284_RS13090 | Not Available | Positive | 2748229 - 2748675 | 16252.5 |
| 2-oxo-tetronate isomerase | E5284_RS13095 | Not Available | Positive | 2748686 - 2749198 | 18178.6 |
| ferritin-like domain-containing protein | E5284_RS13100 | Not Available | Negative | 2749245 - 2749751 | 18874.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

