Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoethanolamine transferase | E5284_RS12995 | Not Available | Positive | 2730070 - 2731650 | 59256.7 |
| is3 family transposase | E5284_RS13000 | Not Available | Negative | 2731908 - 2733076 | 44915.1 |
| papb/focb family fimbrial expression transcriptional regulator | E5284_RS13010 | Not Available | Positive | 2733891 - 2734211 | 12410.8 |
| autotransporter strand-loop-strand o-heptosyltransferase | E5284_RS13015 | Not Available | Positive | 2734411 - 2735631 | 46211.9 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS13020 | Not Available | Positive | 2735624 - 2738455 | 96203.8 |
| hypothetical protein | E5284_RS23305 | Not Available | Negative | 2738533 - 2738628 | 3571.35 |
| duf1398 family protein | E5284_RS13035 | Not Available | Positive | 2738955 - 2739359 | 15763.7 |
| nadp-dependent isocitrate dehydrogenase | E5284_RS13040 | Not Available | Negative | 2739533 - 2740783 | 45684.3 |
| 23s rrna pseudouridine(2457) synthase rlue | E5284_RS13045 | Not Available | Positive | 2740986 - 2741609 | 23750.4 |
| hypothetical protein | E5284_RS13050 | Not Available | Positive | 2741653 - 2742582 | 34081.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

