Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine efflux protein leue | E5284_RS12945 | Not Available | Negative | 2718903 - 2719541 | 23142.9 |
| isochorismate family cysteine hydrolase ycac | E5284_RS12950 | Not Available | Positive | 2719778 - 2720404 | 22796.3 |
| metal-binding protein zint | E5284_RS12955 | Not Available | Negative | 2720462 - 2721073 | 23105.1 |
| atp-binding cassette domain-containing protein | E5284_RS12960 | Not Available | Negative | 2721230 - 2721820 | 21928.8 |
| atp-binding cassette domain-containing protein | E5284_RS12965 | Not Available | Negative | 2721804 - 2722598 | 29169.2 |
| abc transporter permease | E5284_RS12970 | Not Available | Negative | 2722592 - 2723404 | 29873.5 |
| abc transporter permease | E5284_RS12975 | Not Available | Negative | 2723394 - 2724368 | 35661.4 |
| abc transporter substrate-binding protein | E5284_RS12980 | Not Available | Negative | 2724368 - 2725954 | 57825.5 |
| tonb-dependent receptor | E5284_RS12985 | Not Available | Positive | 2726390 - 2728477 | 76110.2 |
| protein yibb | E5284_RS12990 | Not Available | Positive | 2728747 - 2729604 | 33644.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

