Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf488 domain-containing protein | E5284_RS12895 | Not Available | Positive | 2712429 - 2712776 | 13540.1 |
| duf333 domain-containing protein | E5284_RS12900 | Not Available | Negative | 2712784 - 2713032 | 8807.85 |
| sensor domain-containing diguanylate cyclase | E5284_RS12905 | Not Available | Positive | 2713219 - 2714244 | 38404.9 |
| yoak family small membrane protein | E5284_RS12910 | Not Available | Positive | 2714292 - 2714390 | 3474.45 |
| protein yoaj | E5284_RS12915 | Not Available | Positive | 2714393 - 2714467 | 2673.53 |
| glsb/yeaq/ymge family stress response membrane protein | E5284_RS12920 | Not Available | Negative | 2714517 - 2714765 | 8637.13 |
| formate dehydrogenase subunit alpha | E5284_RS12925 | Not Available | Positive | 2715124 - 2717271 | 79590.0 |
| hypothetical protein | E5284_RS12930 | Not Available | Negative | 2717326 - 2717970 | 24842.2 |
| duf1869 domain-containing protein | E5284_RS12935 | Not Available | Negative | 2718179 - 2718361 | 6580.56 |
| duf1971 domain-containing protein year | E5284_RS12940 | Not Available | Negative | 2718365 - 2718727 | 13702.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

