Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yeah/yhbh family protein | E5284_RS12845 | Not Available | Positive | 2703386 - 2704663 | 49144.7 |
| catb-related o-acetyltransferase | E5284_RS12850 | Not Available | Negative | 2704750 - 2705382 | 23300.2 |
| hemerythrin domain-containing protein | E5284_RS12855 | Not Available | Negative | 2705421 - 2705831 | 15800.9 |
| class i sam-dependent methyltransferase | E5284_RS12860 | Not Available | Negative | 2705845 - 2706615 | 28612.6 |
| diguanylate cyclase dgcj | E5284_RS12865 | Not Available | Positive | 2706793 - 2708283 | 56890.3 |
| ybak/prolyl-trna synthetase associated domain-containing protein | E5284_RS12870 | Not Available | Positive | 2708329 - 2708832 | 17935.5 |
| duf441 domain-containing protein | E5284_RS12875 | Not Available | Positive | 2708977 - 2709423 | 15303.6 |
| hypothetical protein | E5284_RS12880 | Not Available | Negative | 2709406 - 2710198 | 29995.5 |
| cynx/nimt family mfs transporter | E5284_RS12885 | Not Available | Positive | 2710298 - 2711485 | 41503.1 |
| ctp synthase | E5284_RS12890 | Not Available | Negative | 2711523 - 2712230 | 25692.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

