Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparaginase | E5284_RS12795 | Not Available | Positive | 2693735 - 2694751 | 36913.3 |
| bifunctional nicotinamidase/pyrazinamidase | E5284_RS12800 | Not Available | Positive | 2694765 - 2695403 | 23358.4 |
| hnh nuclease yajd | E5284_RS12805 | Not Available | Positive | 2695562 - 2695906 | 13270.6 |
| yeac family protein | E5284_RS12810 | Not Available | Negative | 2695968 - 2696243 | 10330.5 |
| peptide-methionine (r)-s-oxide reductase msrb | E5284_RS12815 | Not Available | Negative | 2696285 - 2696698 | 15528.1 |
| glyceraldehyde-3-phosphate dehydrogenase | E5284_RS12820 | Not Available | Positive | 2697040 - 2698035 | 35600.5 |
| d-hexose-6-phosphate mutarotase | E5284_RS12825 | Not Available | Positive | 2698208 - 2699092 | 32446.5 |
| aldo/keto reductase | E5284_RS12830 | Not Available | Negative | 2699129 - 2699983 | 31050.4 |
| mipa/ompv family protein | E5284_RS12835 | Not Available | Negative | 2700149 - 2700895 | 27819.2 |
| protein kinase yeag | E5284_RS12840 | Not Available | Positive | 2701329 - 2703263 | 74509.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

