Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfurtransferase | E5284_RS12745 | Not Available | Positive | 2683163 - 2684470 | 47978.5 |
| cdp-alcohol phosphatidyltransferase family protein | E5284_RS12750 | Not Available | Negative | 2684478 - 2685101 | 22725.9 |
| carboxymuconolactone decarboxylase family protein | E5284_RS12755 | Not Available | Negative | 2685094 - 2685663 | 21272.8 |
| pyrimidine (deoxy)nucleoside triphosphate diphosphatase | E5284_RS12760 | Not Available | Positive | 2685743 - 2686150 | 15166.1 |
| ynjh family protein | E5284_RS12765 | Not Available | Negative | 2686116 - 2686391 | 10172.2 |
| nadp-specific glutamate dehydrogenase | E5284_RS12770 | Not Available | Positive | 2686629 - 2687972 | 48441.2 |
| dna topoisomerase iii | E5284_RS12775 | Not Available | Negative | 2687991 - 2689931 | 73020.6 |
| selenide, water dikinase seld | E5284_RS12780 | Not Available | Negative | 2689936 - 2690979 | 36436.1 |
| nad(p)h nitroreductase | E5284_RS12785 | Not Available | Negative | 2691096 - 2691647 | 19898.1 |
| signal peptide peptidase sppa | E5284_RS12790 | Not Available | Positive | 2691822 - 2693678 | 66936.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

