Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-succinylarginine dihydrolase | E5284_RS12690 | Not Available | Negative | 2671837 - 2673180 | 49318.5 |
| succinylglutamate-semialdehyde dehydrogenase | E5284_RS12695 | Not Available | Negative | 2673177 - 2674655 | 52821.9 |
| arginine n-succinyltransferase | E5284_RS12700 | Not Available | Negative | 2674652 - 2675686 | 38532.1 |
| aspartate aminotransferase family protein | E5284_RS12705 | Not Available | Negative | 2675683 - 2676903 | 43426.9 |
| exodeoxyribonuclease iii | E5284_RS12715 | Not Available | Positive | 2677348 - 2678154 | 30947.8 |
| tvp38/tmem64 family protein | E5284_RS12720 | Not Available | Positive | 2678390 - 2679034 | 23358.2 |
| tvp38/tmem64 family protein | E5284_RS12725 | Not Available | Positive | 2679031 - 2679738 | 25769.0 |
| abc transporter substrate-binding protein | E5284_RS12730 | Not Available | Positive | 2679765 - 2680934 | 43073.1 |
| thiamine abc transporter permease | E5284_RS12735 | Not Available | Positive | 2680907 - 2682442 | 55850.4 |
| atp-binding cassette domain-containing protein | E5284_RS12740 | Not Available | Positive | 2682442 - 2683074 | 23039.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

