Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1198 domain-containing protein | E5284_RS00150 | Not Available | Positive | 30286 - 30738 | 17265.2 |
| purine ribonucleoside efflux pump nepi | E5284_RS00155 | Not Available | Positive | 30869 - 32062 | 41720.4 |
| carbohydrate porin | E5284_RS00160 | Not Available | Negative | 32188 - 33564 | 50397.4 |
| pts lactose/cellobiose transporter subunit iia | E5284_RS00165 | Not Available | Negative | 33771 - 34073 | 11251.6 |
| glycoside hydrolase family 1 protein | E5284_RS00170 | Not Available | Negative | 34086 - 35468 | 53170.4 |
| pts sugar transporter subunit iic | E5284_RS00175 | Not Available | Negative | 35489 - 36820 | 48267.2 |
| pts sugar transporter subunit iib | E5284_RS00180 | Not Available | Negative | 36833 - 37147 | 11530.3 |
| laci family dna-binding transcriptional regulator | E5284_RS00185 | Not Available | Positive | 37440 - 38387 | 34447.5 |
| yics family protein | E5284_RS00190 | Not Available | Negative | 38424 - 38717 | 10895.0 |
| gnat family n-acetyltransferase | E5284_RS00195 | Not Available | Positive | 38847 - 39263 | 15818.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

