Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructosamine kinase family protein | E5284_RS12585 | Not Available | Positive | 2652962 - 2653822 | 32435.3 |
| ynib family protein | E5284_RS12590 | Not Available | Negative | 2653890 - 2654426 | 20446.6 |
| hexitol phosphatase hxpb | E5284_RS12595 | Not Available | Positive | 2654597 - 2655265 | 24304.5 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | E5284_RS12600 | Not Available | Positive | 2655415 - 2656176 | 27303.6 |
| metal-dependent hydrolase | E5284_RS12605 | Not Available | Positive | 2656272 - 2656859 | 22112.4 |
| cystine/sulfocysteine:cation symporter | E5284_RS12610 | Not Available | Positive | 2656995 - 2658386 | 48696.8 |
| cell division activator ceda | E5284_RS12615 | Not Available | Negative | 2658451 - 2658693 | 9340.28 |
| catalase hpii | E5284_RS12620 | Not Available | Positive | 2658906 - 2661164 | 83736.5 |
| chitin disaccharide deacetylase | E5284_RS12625 | Not Available | Negative | 2661201 - 2661959 | 28022.5 |
| 6-phospho-beta-glucosidase | E5284_RS12630 | Not Available | Negative | 2661972 - 2663327 | 50639.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

