Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | E5284_RS12535 | Not Available | Negative | 2645090 - 2646073 | 36974.0 |
| phest operon leader peptide phem | E5284_RS12540 | Not Available | Negative | 2646274 - 2646318 | 1762.13 |
| 50s ribosomal protein l20 | E5284_RS12545 | Not Available | Negative | 2646444 - 2646800 | 13455.7 |
| 50s ribosomal protein l35 | E5284_RS12550 | Not Available | Negative | 2646856 - 2647053 | 7221.25 |
| translation initiation factor if-3 | E5284_RS12555 | Not Available | Negative | 2647150 - 2647692 | 20439.1 |
| threonine--trna ligase | E5284_RS12560 | Not Available | Negative | 2647696 - 2649624 | 73996.4 |
| small membrane protein ynid | E5284_RS12565 | Not Available | Positive | 2649930 - 2650037 | 4144.55 |
| hypothetical protein | E5284_RS12570 | Not Available | Negative | 2650224 - 2650457 | 7774.05 |
| ydiy family protein | E5284_RS12575 | Not Available | Negative | 2650723 - 2651481 | 27693.8 |
| 6-phosphofructokinase ii | E5284_RS12580 | Not Available | Positive | 2651769 - 2652698 | 32497.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

