Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | E5284_RS12435 | Not Available | Positive | 2622475 - 2623764 | 45810.6 |
| ferredoxin family protein | E5284_RS12440 | Not Available | Positive | 2623761 - 2624054 | 10832.8 |
| medium-chain fatty-acid--coa ligase | E5284_RS12445 | Not Available | Positive | 2624136 - 2625761 | 59865.4 |
| phosphoenolpyruvate synthase | E5284_RS12450 | Not Available | Negative | 2625856 - 2628234 | 87129.8 |
| posphoenolpyruvate synthetase regulatory kinase/phosphorylase ppsr | E5284_RS12455 | Not Available | Positive | 2628564 - 2629397 | 31183.7 |
| 3-deoxy-7-phosphoheptulonate synthase aroh | E5284_RS12460 | Not Available | Positive | 2629553 - 2630599 | 38644.1 |
| hemin uptake protein hemp | E5284_RS12465 | Not Available | Positive | 2630778 - 2630966 | 6905.44 |
| tonb-dependent hemoglobin/transferrin/lactoferrin family receptor | E5284_RS12470 | Not Available | Positive | 2631042 - 2633024 | 72141.7 |
| hemin-degrading factor | E5284_RS12475 | Not Available | Positive | 2633071 - 2634099 | 38263.6 |
| hemin abc transporter substrate-binding protein | E5284_RS12480 | Not Available | Positive | 2634096 - 2634917 | 28911.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

