Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ydil family protein | E5284_RS12385 | Not Available | Positive | 2611556 - 2611912 | 13876.5 |
| mfs transporter | E5284_RS12390 | Not Available | Positive | 2611960 - 2613171 | 43990.9 |
| mfs transporter | E5284_RS12395 | Not Available | Positive | 2613411 - 2614646 | 44681.4 |
| quinate/shikimate dehydrogenase | E5284_RS12400 | Not Available | Positive | 2614668 - 2615534 | 31351.9 |
| type i 3-dehydroquinate dehydratase | E5284_RS12405 | Not Available | Positive | 2615570 - 2616328 | 27442.3 |
| acyl coa:acetate/3-ketoacid coa transferase | E5284_RS12410 | Not Available | Positive | 2616484 - 2618079 | 57214.1 |
| acyl-coa dehydrogenase | E5284_RS12415 | Not Available | Positive | 2618093 - 2619244 | 42937.5 |
| arac family transcriptional regulator | E5284_RS12420 | Not Available | Negative | 2619298 - 2620188 | 34055.4 |
| electron transfer flavoprotein | E5284_RS12425 | Not Available | Positive | 2620696 - 2621460 | 27469.3 |
| electron transfer flavoprotein subunit alpha | E5284_RS12430 | Not Available | Positive | 2621482 - 2622417 | 33521.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

