Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein sufb | E5284_RS12335 | Not Available | Negative | 2599278 - 2600765 | 54647.0 |
| fe-s cluster assembly scaffold sufa | E5284_RS12340 | Not Available | Negative | 2600774 - 2601142 | 13351.8 |
| lysr family transcriptional regulator | E5284_RS12345 | Not Available | Negative | 2601641 - 2602516 | 31599.5 |
| vmh family mbl fold metallo-hydrolase | E5284_RS12350 | Not Available | Positive | 2602639 - 2603490 | 31064.3 |
| ydih family protein | E5284_RS12355 | Not Available | Negative | 2603559 - 2603747 | 7247.64 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | E5284_RS12360 | Not Available | Negative | 2603825 - 2604235 | 14854.9 |
| fad-binding and (fe-s)-binding domain-containing protein | E5284_RS12365 | Not Available | Negative | 2604232 - 2607288 | 112997.0 |
| ai-2e family transporter ydik | E5284_RS12370 | Not Available | Positive | 2607502 - 2608611 | 39696.4 |
| Ncrna_class:antisense_rna | Not Available | Not Available | Positive | 2608797 - 2608904 | Not Available |
| glycoside hydrolase family 3 n-terminal domain-containing protein | E5284_RS12380 | Not Available | Negative | 2608908 - 2611283 | 86176.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

