Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metq/nlpa family abc transporter substrate-binding protein | E5284_RS12285 | Not Available | Negative | 2589372 - 2590184 | 29520.5 |
| methionine abc transporter permease | E5284_RS12290 | Not Available | Negative | 2590206 - 2590874 | 23580.6 |
| methionine abc transporter atp-binding protein | E5284_RS12295 | Not Available | Negative | 2590867 - 2591889 | 37391.2 |
| pyruvate kinase pykf | E5284_RS12300 | Not Available | Positive | 2592462 - 2593883 | 51034.0 |
| murein lipoprotein lpp | E5284_RS12305 | Not Available | Positive | 2594192 - 2594428 | 8334.87 |
| l,d-transpeptidase family protein | E5284_RS12310 | Not Available | Negative | 2594498 - 2595499 | 36009.7 |
| cysteine desulfuration protein sufe | E5284_RS12315 | Not Available | Negative | 2595623 - 2596039 | 15801.2 |
| cysteine desulfurase sufs | E5284_RS12320 | Not Available | Negative | 2596052 - 2597272 | 44371.4 |
| fe-s cluster assembly protein sufd | E5284_RS12325 | Not Available | Negative | 2597269 - 2598540 | 46712.4 |
| fe-s cluster assembly atpase sufc | E5284_RS12330 | Not Available | Negative | 2598515 - 2599261 | 27549.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

