Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | E5284_RS12235 | Not Available | Negative | 2576734 - 2577402 | 24903.8 |
| ydhw family putative oxidoreductase system protein | E5284_RS12240 | Not Available | Negative | 2577467 - 2578144 | 25257.7 |
| aldehyde ferredoxin oxidoreductase | E5284_RS12245 | Not Available | Negative | 2578155 - 2580257 | 77443.0 |
| ferredoxin-like protein | E5284_RS12250 | Not Available | Negative | 2580503 - 2581129 | 22355.1 |
| fumarate hydratase fumd | E5284_RS12255 | Not Available | Negative | 2581640 - 2581849 | 7796.61 |
| tetrathionate respiration response regulator ttrr | E5284_RS12260 | Not Available | Negative | 2581943 - 2582527 | 21295.2 |
| tetrathionate respiration histidine kinase ttrs | E5284_RS12265 | Not Available | Negative | 2582502 - 2584283 | 65848.6 |
| tetrathionate reductase subunit ttrb | E5284_RS12270 | Not Available | Positive | 2584463 - 2585197 | 26991.3 |
| tetrathionate reductase subunit ttrc | E5284_RS12275 | Not Available | Positive | 2585198 - 2586220 | 38133.2 |
| tetrathionate reductase subunit ttra | E5284_RS12280 | Not Available | Positive | 2586213 - 2589284 | 110931.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

