Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| apc family permease | E5284_RS12195 | Not Available | Negative | 2569455 - 2570936 | 53734.5 |
| hypothetical protein | E5284_RS23370 | Not Available | Negative | 2571211 - 2571342 | 4807.54 |
| hypothetical protein | E5284_RS12200 | Not Available | Positive | 2571479 - 2571619 | 5171.9 |
| hypothetical protein | E5284_RS23185 | Not Available | Negative | 2571737 - 2571898 | 6103.27 |
| abc transporter substrate-binding protein | E5284_RS12205 | Not Available | Positive | 2572021 - 2572854 | 29540.7 |
| amino acid abc transporter atp-binding protein | E5284_RS12210 | Not Available | Positive | 2572856 - 2573674 | 30013.3 |
| amino acid abc transporter permease | E5284_RS12215 | Not Available | Positive | 2573674 - 2574459 | 28688.4 |
| amino acid abc transporter permease | E5284_RS12220 | Not Available | Positive | 2574449 - 2575126 | 24485.7 |
| protein ydht | E5284_RS12225 | Not Available | Negative | 2575136 - 2575948 | 28635.3 |
| thiosulfate reductase cytochrome b subunit | E5284_RS12230 | Not Available | Negative | 2575952 - 2576737 | 29362.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

