Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux mfs transporter emrd | E5284_RS00100 | Not Available | Negative | 19877 - 21061 | 41974.3 |
| dmt family transporter | E5284_RS00105 | Not Available | Negative | 21270 - 22130 | 30149.7 |
| type i toxin-antitoxin system toxin tisb | E5284_RS00110 | Not Available | Negative | 22223 - 22312 | 3225.32 |
| ilvb operon leader peptide ivbl | E5284_RS00115 | Not Available | Positive | 22835 - 22933 | 3291.23 |
| acetolactate synthase large subunit | E5284_RS00120 | Not Available | Positive | 23039 - 24727 | 60318.1 |
| acetolactate synthase small subunit | E5284_RS00125 | Not Available | Positive | 24731 - 25021 | 11112.4 |
| transcriptional regulator uhpa | E5284_RS00130 | Not Available | Positive | 25176 - 25769 | 20962.6 |
| signal transduction histidine-protein kinase/phosphatase uhpb | E5284_RS00135 | Not Available | Positive | 25766 - 27268 | 56013.7 |
| mfs transporter | E5284_RS00140 | Not Available | Positive | 27278 - 28606 | 48520.6 |
| hexose-6-phosphate:phosphate antiporter | E5284_RS00145 | Not Available | Positive | 28749 - 30140 | 50724.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

