Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excisionase family protein | E5284_RS12095 | Not Available | Positive | 2546169 - 2546285 | 4424.24 |
| site-specific integrase | E5284_RS12100 | Not Available | Positive | 2546285 - 2547556 | 48399.9 |
| Trna-val | Not Available | Not Available | Positive | 2547706 - 2547782 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 2547787 - 2547863 | Not Available |
| hypothetical protein | E5284_RS12115 | Not Available | Negative | 2548028 - 2549689 | 59989.7 |
| ziru family protein | E5284_RS12120 | Not Available | Negative | 2549765 - 2550427 | 22781.4 |
| inverse autotransporter beta domain-containing protein | E5284_RS12125 | Not Available | Negative | 2550482 - 2554366 | 138188.0 |
| lysr family transcriptional regulator | E5284_RS12130 | Not Available | Positive | 2554912 - 2555847 | 35509.0 |
| substrate-binding domain-containing protein | E5284_RS12135 | Not Available | Positive | 2555947 - 2556672 | 26259.5 |
| abc transporter atp-binding protein | E5284_RS12140 | Not Available | Negative | 2556656 - 2557408 | 27427.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

