Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1294 domain-containing protein | E5284_RS12040 | Not Available | Positive | 2533486 - 2533830 | 12941.4 |
| tetr/acrr family transcriptional regulator | E5284_RS12045 | Not Available | Negative | 2533859 - 2534431 | 22054.6 |
| abc transporter six-transmembrane domain-containing protein | E5284_RS12050 | Not Available | Positive | 2534531 - 2535424 | 32974.0 |
| ai-2e family transporter | E5284_RS12055 | Not Available | Positive | 2535544 - 2536653 | 40248.0 |
| diguanylate cyclase | E5284_RS12060 | Not Available | Positive | 2536772 - 2538556 | 66405.3 |
| phzf family phenazine biosynthesis protein | E5284_RS12065 | Not Available | Positive | 2538673 - 2539476 | 29916.8 |
| tryptophan--trna ligase | E5284_RS12070 | Not Available | Positive | 2539710 - 2540714 | 36635.6 |
| hypothetical protein | E5284_RS12075 | Not Available | Negative | 2540700 - 2540885 | 6850.64 |
| cupin domain-containing protein | E5284_RS12080 | Not Available | Positive | 2541083 - 2541466 | 13938.3 |
| p-loop ntpase fold protein | E5284_RS12090 | Not Available | Positive | 2542499 - 2545795 | 126050.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

