Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| purine nucleoside transporter punc | E5284_RS11990 | Not Available | Positive | 2524288 - 2525496 | 43245.7 |
| cyclopropane fatty acyl phospholipid synthase | E5284_RS11995 | Not Available | Positive | 2525782 - 2526930 | 44076.5 |
| riboflavin synthase subunit alpha | E5284_RS12000 | Not Available | Negative | 2526976 - 2527617 | 23395.3 |
| mdtk family multidrug efflux mate transporter | E5284_RS12005 | Not Available | Positive | 2527835 - 2529208 | 49487.2 |
| rlua family pseudouridine synthase | E5284_RS12010 | Not Available | Negative | 2529254 - 2529952 | 25704.2 |
| monooxygenase | E5284_RS12015 | Not Available | Positive | 2530096 - 2530404 | 11738.9 |
| type a chloramphenicol o-acetyltransferase | E5284_RS12020 | Not Available | Negative | 2530532 - 2531209 | 26492.4 |
| hypothetical protein | E5284_RS12025 | Not Available | Negative | 2531424 - 2531672 | 9094.53 |
| hypothetical protein | E5284_RS12030 | Not Available | Negative | 2531754 - 2532128 | 13497.2 |
| hypothetical protein | E5284_RS12035 | Not Available | Negative | 2532367 - 2532756 | 14286.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

