Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkene reductase | E5284_RS11940 | Not Available | Positive | 2515831 - 2516928 | 39450.6 |
| lactoylglutathione lyase | E5284_RS11945 | Not Available | Positive | 2517026 - 2517433 | 14921.6 |
| ribonuclease t | E5284_RS11950 | Not Available | Positive | 2517528 - 2518175 | 23611.3 |
| monothiol glutaredoxin 4 | E5284_RS11955 | Not Available | Negative | 2518226 - 2518573 | 12923.5 |
| c40 family peptidase | E5284_RS11960 | Not Available | Positive | 2518906 - 2519736 | 30527.9 |
| superoxide dismutase | E5284_RS11965 | Not Available | Positive | 2519864 - 2520445 | 21288.8 |
| mfs transporter | E5284_RS11970 | Not Available | Negative | 2520486 - 2521655 | 39986.4 |
| cytochrome bd-i accessory subunit cydh | E5284_RS11975 | Not Available | Negative | 2521834 - 2521923 | 2985.81 |
| hth-type transcriptional repressor purr | E5284_RS11980 | Not Available | Positive | 2522221 - 2523246 | 38116.8 |
| dna-binding transcriptional activator punr | E5284_RS11985 | Not Available | Negative | 2523264 - 2524175 | 34459.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

