Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maly/patb family protein | E5284_RS11795 | Not Available | Positive | 2489660 - 2490832 | 43826.0 |
| ynfu family zinc-binding protein | E5284_RS23180 | Not Available | Positive | 2490994 - 2491164 | 6366.84 |
| adenosine deaminase | E5284_RS11800 | Not Available | Positive | 2491391 - 2492392 | 36132.4 |
| oxidoreductase | E5284_RS11805 | Not Available | Negative | 2492440 - 2493480 | 38339.6 |
| division septum protein blr | E5284_RS11810 | Not Available | Positive | 2493722 - 2493856 | 4837.99 |
| transcription modulator ydgt | E5284_RS11815 | Not Available | Positive | 2494142 - 2494357 | 8456.14 |
| duf2569 domain-containing protein | E5284_RS11820 | Not Available | Positive | 2494449 - 2494889 | 16356.7 |
| electron transport complex subunit rsxa | E5284_RS11825 | Not Available | Positive | 2494966 - 2495547 | 20871.8 |
| electron transport complex subunit rsxb | E5284_RS11830 | Not Available | Positive | 2495547 - 2496125 | 20611.0 |
| electron transport complex subunit rsxc | E5284_RS11835 | Not Available | Positive | 2496118 - 2498241 | 76110.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

