Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoglycoside phosphotransferase family protein | E5284_RS11745 | Not Available | Negative | 2476073 - 2476903 | 30207.1 |
| sgcj/ecac family oxidoreductase | E5284_RS11750 | Not Available | Negative | 2477193 - 2477645 | 16548.6 |
| two-component system sensor histidine kinase rstb | E5284_RS11755 | Not Available | Positive | 2478242 - 2479543 | 49405.9 |
| dna replication terminus site-binding protein | E5284_RS11760 | Not Available | Positive | 2479617 - 2480546 | 35781.1 |
| class ii fumarate hydratase | E5284_RS11765 | Not Available | Negative | 2480543 - 2481946 | 50436.0 |
| class i fumarate hydratase | E5284_RS11770 | Not Available | Negative | 2482088 - 2483734 | 60197.6 |
| mannose-6-phosphate isomerase | E5284_RS11775 | Not Available | Positive | 2483998 - 2485173 | 42658.1 |
| ydga family protein | E5284_RS11780 | Not Available | Positive | 2485281 - 2486789 | 54098.5 |
| mal regulon transcriptional regulator mali | E5284_RS11785 | Not Available | Negative | 2486858 - 2487886 | 36327.5 |
| maltose/glucose-specific pts transporter subunit iibc | E5284_RS11790 | Not Available | Positive | 2488057 - 2489649 | 56833.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

