Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dethiobiotin synthase | E5284_RS11640 | Not Available | Negative | 2454750 - 2455445 | 24764.2 |
| sugar metabolism global transcriptional regulator mlc | E5284_RS11645 | Not Available | Negative | 2455571 - 2456791 | 44080.6 |
| lysr family transcriptional regulator | E5284_RS11650 | Not Available | Negative | 2456920 - 2457819 | 33569.9 |
| mfs transporter | E5284_RS11655 | Not Available | Positive | 2457916 - 2459169 | 45000.9 |
| cpbp family intramembrane glutamic endopeptidase | E5284_RS11660 | Not Available | Negative | 2459202 - 2459891 | 26006.5 |
| carboxypeptidase m32 | E5284_RS11665 | Not Available | Positive | 2460070 - 2461557 | 55637.7 |
| acid resistance repetitive basic protein asr | E5284_RS11670 | Not Available | Positive | 2461695 - 2462015 | 10793.0 |
| trypsin-like serine peptidase | E5284_RS11675 | Not Available | Positive | 2462286 - 2463107 | 29291.9 |
| multidrug/spermidine efflux smr transporter subunit mdti | E5284_RS11680 | Not Available | Negative | 2463143 - 2463472 | 11671.7 |
| multidrug/spermidine efflux smr transporter subunit mdtj | E5284_RS11685 | Not Available | Negative | 2463459 - 2463824 | 12887.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

