Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| small heat shock chaperone ibpb | E5284_RS00050 | Not Available | Positive | 10806 - 11234 | 16099.9 |
| putative transporter | E5284_RS00055 | Not Available | Positive | 11359 - 13020 | 59061.9 |
| hypothetical protein | E5284_RS00060 | Not Available | Negative | 13144 - 13593 | 15998.1 |
| yidh family protein | E5284_RS00065 | Not Available | Positive | 13702 - 14049 | 12783.2 |
| duf202 domain-containing protein | E5284_RS00070 | Not Available | Positive | 14039 - 14401 | 13684.9 |
| radical sam protein | E5284_RS00075 | Not Available | Positive | 14398 - 14928 | 20159.3 |
| d-serine ammonia-lyase | E5284_RS00080 | Not Available | Negative | 14941 - 16263 | 47466.7 |
| d-serine transporter dsdx | E5284_RS00085 | Not Available | Negative | 16281 - 17618 | 46948.9 |
| dna-binding transcriptional regulator dsdc | E5284_RS00090 | Not Available | Positive | 17860 - 18786 | 34919.6 |
| cellulase family glycosylhydrolase | E5284_RS00095 | Not Available | Positive | 18868 - 19950 | 40119.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

