Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ynfa family protein | E5284_RS11590 | Not Available | Negative | 2446230 - 2446556 | 11815.1 |
| duf1283 family protein | E5284_RS11595 | Not Available | Positive | 2446710 - 2447051 | 12862.0 |
| spermidine n1-acetyltransferase | E5284_RS11600 | Not Available | Positive | 2447089 - 2447649 | 21823.2 |
| ynfc family lipoprotein | E5284_RS11605 | Not Available | Negative | 2447655 - 2448365 | 26223.8 |
| duf1161 domain-containing protein | E5284_RS11610 | Not Available | Positive | 2448472 - 2448777 | 10710.5 |
| selenate/tellurate reductase subunit ynfe | E5284_RS11615 | Not Available | Positive | 2448926 - 2451364 | 90108.2 |
| dmso/selenate family reductase complex b subunit | E5284_RS11620 | Not Available | Positive | 2451375 - 2451992 | 22630.8 |
| dimethyl sulfoxide reductase anchor subunit family protein | E5284_RS11625 | Not Available | Positive | 2451994 - 2452848 | 30634.6 |
| tat proofreading chaperone dmsd | E5284_RS11630 | Not Available | Positive | 2452891 - 2453505 | 23255.5 |
| voltage-gated clc-type chloride channel clcb | E5284_RS11635 | Not Available | Positive | 2453505 - 2454794 | 45582.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

