Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein mgts | E5284_RS11535 | Not Available | Positive | 2435275 - 2435370 | 3537.38 |
| diguanylate cyclase | E5284_RS11545 | Not Available | Negative | 2435640 - 2436560 | 35023.1 |
| peptidyl-dipeptidase dcp | E5284_RS11550 | Not Available | Negative | 2436712 - 2438757 | 77391.3 |
| bifunctional nadp-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ydfg | E5284_RS11555 | Not Available | Positive | 2438829 - 2439575 | 27140.4 |
| gntr family transcriptional regulator | E5284_RS11560 | Not Available | Positive | 2439662 - 2440348 | 26410.6 |
| putative selenium delivery protein ydfz | E5284_RS11565 | Not Available | Positive | 2440539 - 2440742 | 7386.94 |
| mannitol dehydrogenase family protein | E5284_RS11570 | Not Available | Negative | 2440819 - 2442285 | 53726.6 |
| mfs transporter | E5284_RS11575 | Not Available | Negative | 2442441 - 2443820 | 49538.6 |
| zn-dependent oxidoreductase | E5284_RS11580 | Not Available | Negative | 2443874 - 2444893 | 36909.7 |
| starvation-sensing protein rspa | E5284_RS11585 | Not Available | Negative | 2444907 - 2446121 | 45929.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

