Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaminase b | E5284_RS11485 | Not Available | Negative | 2425903 - 2426829 | 33593.6 |
| succinate-semialdehyde dehydrogenase | E5284_RS11490 | Not Available | Negative | 2426947 - 2428335 | 49204.0 |
| putrescine utilization regulator ptrr | E5284_RS11495 | Not Available | Positive | 2428438 - 2429313 | 32380.0 |
| sugar transporter | E5284_RS11500 | Not Available | Positive | 2429463 - 2430653 | 42348.6 |
| marc family naat transporter | E5284_RS11505 | Not Available | Negative | 2430707 - 2431372 | 23513.7 |
| multiple antibiotic resistance transcriptional regulator marr | E5284_RS11510 | Not Available | Positive | 2431629 - 2432063 | 16284.2 |
| mdr efflux pump acrab transcriptional activator mara | E5284_RS11515 | Not Available | Positive | 2432082 - 2432465 | 15186.1 |
| multiple antibiotic resistance protein marb | E5284_RS11520 | Not Available | Positive | 2432496 - 2432714 | 7856.46 |
| o-acetylserine/cysteine exporter | E5284_RS11525 | Not Available | Negative | 2432746 - 2433645 | 32167.1 |
| efflux mfs transporter ydee | E5284_RS11530 | Not Available | Positive | 2433844 - 2435031 | 42613.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

