Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS11435 | Not Available | Positive | 2415661 - 2415975 | 11499.1 |
| gnat family n-acetyltransferase | E5284_RS11440 | Not Available | Negative | 2416324 - 2416878 | 21020.3 |
| trans-aconitate 2-methyltransferase | E5284_RS11445 | Not Available | Positive | 2417036 - 2417794 | 29059.2 |
| caif/grla family transcriptional regulator | E5284_RS11450 | Not Available | Negative | 2417899 - 2418402 | 19341.0 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS11455 | Not Available | Negative | 2418772 - 2421531 | 98886.3 |
| gfa family protein | E5284_RS11460 | Not Available | Positive | 2421859 - 2422242 | 13725.9 |
| bestrophin family protein | E5284_RS11465 | Not Available | Negative | 2422248 - 2423162 | 34784.0 |
| tagaturonate reductase | E5284_RS11470 | Not Available | Negative | 2423377 - 2424828 | 54418.7 |
| gnat family n-acetyltransferase | E5284_RS11475 | Not Available | Negative | 2424935 - 2425462 | 19050.9 |
| duf4186 domain-containing protein | E5284_RS11480 | Not Available | Negative | 2425544 - 2425903 | 13596.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

