Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | E5284_RS11380 | Not Available | Negative | 2406911 - 2407810 | 33747.3 |
| aldo/keto reductase | E5284_RS11385 | Not Available | Positive | 2408031 - 2408903 | 32724.1 |
| alpha/beta hydrolase | E5284_RS11390 | Not Available | Negative | 2408956 - 2410020 | 39109.8 |
| carboxymuconolactone decarboxylase family protein | E5284_RS11395 | Not Available | Negative | 2410159 - 2410920 | 26906.2 |
| cupin domain-containing protein | E5284_RS11400 | Not Available | Negative | 2410898 - 2411377 | 17071.2 |
| heavy metal sensor histidine kinase | E5284_RS11405 | Not Available | Negative | 2411442 - 2412899 | 53308.6 |
| heavy metal response regulator transcription factor | E5284_RS11410 | Not Available | Negative | 2412915 - 2413595 | 25341.8 |
| aldo/keto reductase | E5284_RS11415 | Not Available | Negative | 2413618 - 2414430 | 30230.6 |
| hypothetical protein | E5284_RS11420 | Not Available | Negative | 2414441 - 2414635 | 7089.11 |
| phage baseplate protein | E5284_RS23175 | Not Available | Positive | 2414886 - 2415062 | 6031.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

