Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix transcriptional regulator | E5284_RS11335 | Not Available | Positive | 2398228 - 2398857 | 24396.8 |
| alkyl/aryl-sulfatase | E5284_RS11340 | Not Available | Positive | 2399166 - 2401148 | 72662.0 |
| duf1778 domain-containing protein | E5284_RS11345 | Not Available | Positive | 2401261 - 2401557 | 11515.8 |
| gnat family n-acetyltransferase | E5284_RS11350 | Not Available | Positive | 2401548 - 2402030 | 17756.4 |
| sdr family oxidoreductase | E5284_RS11355 | Not Available | Negative | 2402131 - 2402895 | 28495.2 |
| lysr family transcriptional regulator | E5284_RS11360 | Not Available | Positive | 2403044 - 2403937 | 33293.1 |
| hypothetical protein | E5284_RS11365 | Not Available | Negative | 2403972 - 2404250 | 10110.2 |
| nad(p)-dependent alcohol dehydrogenase | E5284_RS11370 | Not Available | Positive | 2404708 - 2405757 | 37774.5 |
| hypothetical protein | E5284_RS23170 | Not Available | Positive | 2405883 - 2406005 | 4517.38 |
| carboxymuconolactone decarboxylase family protein | E5284_RS11375 | Not Available | Positive | 2406030 - 2406821 | 28750.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

