Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | E5284_RS11285 | Not Available | Negative | 2382050 - 2383189 | 42176.9 |
| duf3302 domain-containing protein | E5284_RS11290 | Not Available | Negative | 2383192 - 2383530 | 12917.9 |
| helix-turn-helix domain-containing protein | E5284_RS11295 | Not Available | Positive | 2383906 - 2384367 | 17535.4 |
| glycoside hydrolase family 10 protein | E5284_RS11300 | Not Available | Negative | 2384408 - 2385775 | 51379.8 |
| vf530 family dna-binding protein | E5284_RS11305 | Not Available | Negative | 2385788 - 2386075 | 10775.6 |
| is3 family transposase | E5284_RS11310 | Not Available | Negative | 2386144 - 2387312 | 44915.1 |
| hlyd family type i secretion periplasmic adaptor subunit | E5284_RS11315 | Not Available | Negative | 2387485 - 2388819 | 49111.3 |
| type i secretion system permease/atpase | E5284_RS11320 | Not Available | Negative | 2388822 - 2390561 | 63095.6 |
| peroxidase family protein | E5284_RS11325 | Not Available | Negative | 2390572 - 2395911 | 187661.0 |
| ompp1/fadl family transporter | E5284_RS11330 | Not Available | Positive | 2396761 - 2397948 | 43631.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

