Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | E5284_RS11235 | Not Available | Positive | 2371327 - 2372217 | 32619.0 |
| abc transporter atp-binding protein | E5284_RS11240 | Not Available | Negative | 2372245 - 2373183 | 34811.3 |
| abc transporter atp-binding protein | E5284_RS11245 | Not Available | Negative | 2373176 - 2374162 | 36077.8 |
| d,d-dipeptide abc transporter permease | E5284_RS11250 | Not Available | Negative | 2374159 - 2375055 | 32021.9 |
| abc transporter permease | E5284_RS11255 | Not Available | Negative | 2375052 - 2376074 | 37522.6 |
| abc transporter substrate-binding protein | E5284_RS11260 | Not Available | Negative | 2376123 - 2377685 | 57423.2 |
| d-alanyl-d-alanine dipeptidase | E5284_RS11265 | Not Available | Negative | 2377702 - 2378289 | 21403.6 |
| murr/rpir family transcriptional regulator | E5284_RS11270 | Not Available | Negative | 2378304 - 2379170 | 32450.6 |
| acid-activated periplasmic chaperone hdeb | E5284_RS11275 | Not Available | Positive | 2379572 - 2379901 | 11950.3 |
| methyl-accepting chemotaxis protein | E5284_RS11280 | Not Available | Positive | 2380058 - 2382001 | 69809.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

