Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-f family atp-binding cassette domain-containing protein | E5284_RS11185 | Not Available | Negative | 2360723 - 2362438 | 63928.3 |
| malate dehydrogenase | E5284_RS11190 | Not Available | Negative | 2362749 - 2364446 | 63299.0 |
| stationary-phase-induced ribosome-associated protein | E5284_RS11195 | Not Available | Negative | 2364626 - 2364766 | 5200.2 |
| osmc family protein | E5284_RS11200 | Not Available | Positive | 2364995 - 2365426 | 14995.8 |
| 3-hydroxybutyrate dehydrogenase | E5284_RS11205 | Not Available | Negative | 2365469 - 2366239 | 26894.3 |
| gntp family permease | E5284_RS11210 | Not Available | Negative | 2366251 - 2367645 | 48688.8 |
| 3-hydroxyacyl-coa dehydrogenase family protein | E5284_RS11215 | Not Available | Negative | 2367689 - 2368612 | 33443.5 |
| acetyl-coa c-acetyltransferase | E5284_RS11220 | Not Available | Negative | 2368602 - 2369807 | 41492.9 |
| coa transferase subunit b | E5284_RS11225 | Not Available | Negative | 2369818 - 2370474 | 23187.4 |
| coa transferase subunit a | E5284_RS11230 | Not Available | Negative | 2370477 - 2371184 | 25368.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

