Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | E5284_RS11135 | Not Available | Negative | 2349857 - 2350435 | 21731.2 |
| mfs transporter | E5284_RS11140 | Not Available | Positive | 2350552 - 2352039 | 51831.3 |
| gfa family protein | E5284_RS11145 | Not Available | Negative | 2352040 - 2352420 | 14472.2 |
| porin ompd | E5284_RS11150 | Not Available | Negative | 2352564 - 2353643 | 39733.5 |
| aromatic amino acid efflux dmt transporter yddg | E5284_RS11155 | Not Available | Negative | 2354104 - 2354985 | 31443.2 |
| formate dehydrogenase-n subunit alpha | E5284_RS11160 | Not Available | Positive | 2355274 - 2358321 | 112644.0 |
| formate dehydrogenase n subunit beta | E5284_RS11165 | Not Available | Positive | 2358335 - 2359219 | 32422.6 |
| formate dehydrogenase-n subunit gamma | E5284_RS11170 | Not Available | Positive | 2359212 - 2359868 | 25585.3 |
| higa family addiction module antitoxin | E5284_RS11175 | Not Available | Negative | 2359973 - 2360257 | 10327.7 |
| type ii toxin-antitoxin system rele/pare family toxin | E5284_RS11180 | Not Available | Negative | 2360257 - 2360535 | 10601.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

