Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 3805231 - 3805246 | Not Available |
| chromosomal replication initiator protein dnaa | E5284_RS00005 | Not Available | Positive | 1 - 1404 | 52782.2 |
| dna polymerase iii subunit beta | E5284_RS00010 | Not Available | Positive | 1409 - 2509 | 40597.1 |
| dna replication/repair protein recf | E5284_RS00015 | Not Available | Positive | 2656 - 3729 | 40462.3 |
| dna topoisomerase (atp-hydrolyzing) subunit b | E5284_RS00020 | Not Available | Positive | 3758 - 6172 | 89726.7 |
| sugar-phosphatase | E5284_RS00025 | Not Available | Positive | 6386 - 7198 | 29674.7 |
| colicin m resistance lipid reductase cbra | E5284_RS00030 | Not Available | Negative | 7204 - 8331 | 42501.1 |
| duf3748 domain-containing protein | E5284_RS00035 | Not Available | Positive | 8431 - 9657 | 45362.9 |
| ycek/yidq family lipoprotein | E5284_RS00040 | Not Available | Negative | 9659 - 9991 | 11920.5 |
| small heat shock chaperone ibpa | E5284_RS00045 | Not Available | Positive | 10298 - 10711 | 15723.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

