Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tautomerase ppta | E5284_RS11085 | Not Available | Positive | 2336460 - 2336687 | 8558.22 |
| alkyl/aryl-sulfatase | E5284_RS11090 | Not Available | Negative | 2336727 - 2338703 | 72459.8 |
| flavin reductase family protein | E5284_RS11095 | Not Available | Negative | 2338911 - 2339483 | 20978.2 |
| n-hydroxyarylamine o-acetyltransferase | E5284_RS11100 | Not Available | Positive | 2339641 - 2340486 | 32049.0 |
| phzf family isomerase | E5284_RS11105 | Not Available | Negative | 2340538 - 2341434 | 32202.5 |
| respiratory nitrate reductase subunit gamma | E5284_RS11110 | Not Available | Negative | 2341555 - 2342235 | 25531.8 |
| nitrate reductase molybdenum cofactor assembly chaperone | E5284_RS11115 | Not Available | Negative | 2342232 - 2342927 | 25871.8 |
| nitrate reductase subunit beta | E5284_RS11120 | Not Available | Negative | 2342927 - 2344471 | 58661.2 |
| nitrate reductase subunit alpha | E5284_RS11125 | Not Available | Negative | 2344468 - 2348208 | 140383.0 |
| nark family nitrate/nitrite mfs transporter | E5284_RS11130 | Not Available | Negative | 2348264 - 2349649 | 49587.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

