Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylamine n-acetyltransferase family protein | E5284_RS10930 | Not Available | Positive | 2302567 - 2303433 | 32429.5 |
| sulp family inorganic anion transporter | E5284_RS10935 | Not Available | Positive | 2303823 - 2305553 | 62167.1 |
| hypothetical protein | E5284_RS10940 | Not Available | Positive | 2305579 - 2305797 | 8643.35 |
| hypothetical protein | E5284_RS10945 | Not Available | Negative | 2305937 - 2306421 | 18454.8 |
| is3 family transposase | E5284_RS10950 | Not Available | Positive | 2306656 - 2307824 | 44915.1 |
| hypothetical protein | E5284_RS10955 | Not Available | Negative | 2307832 - 2308296 | 17135.4 |
| stress response membrane protein yncl | E5284_RS10960 | Not Available | Negative | 2308653 - 2308748 | 3360.2 |
| ghot/ortt family toxin | E5284_RS10965 | Not Available | Positive | 2308941 - 2309114 | 6518.31 |
| virulence factor srfc family protein | E5284_RS10970 | Not Available | Negative | 2309123 - 2311282 | 80669.3 |
| virulence factor srfb | E5284_RS10975 | Not Available | Negative | 2311279 - 2314260 | 110782.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

