Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2474 domain-containing protein | E5284_RS10880 | Not Available | Negative | 2291098 - 2291223 | 4539.87 |
| cytochrome d ubiquinol oxidase subunit ii | E5284_RS10885 | Not Available | Negative | 2291223 - 2292233 | 36871.0 |
| cytochrome ubiquinol oxidase subunit i | E5284_RS10890 | Not Available | Negative | 2292233 - 2293636 | 52035.9 |
| plp-dependent aminotransferase family protein | E5284_RS10895 | Not Available | Positive | 2293987 - 2295396 | 52919.7 |
| putative abc transporter substrate-binding protein ydcs | E5284_RS10900 | Not Available | Positive | 2295727 - 2296872 | 42243.4 |
| abc transporter atp-binding protein | E5284_RS10905 | Not Available | Positive | 2296889 - 2297905 | 37124.8 |
| abc transporter permease | E5284_RS10910 | Not Available | Positive | 2297906 - 2298850 | 34550.3 |
| abc transporter permease | E5284_RS10915 | Not Available | Positive | 2298840 - 2299646 | 28985.9 |
| aminobutyraldehyde dehydrogenase | E5284_RS10920 | Not Available | Positive | 2299668 - 2301095 | 50885.9 |
| lysr family transcriptional regulator | E5284_RS10925 | Not Available | Negative | 2301409 - 2302323 | 34061.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

