Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ydck family protein | E5284_RS10830 | Not Available | Negative | 2281305 - 2282285 | 35659.9 |
| dicarboxylate transporter/tellurite-resistance protein teha | E5284_RS10835 | Not Available | Positive | 2282399 - 2283400 | 36355.2 |
| tellurite resistance methyltransferase tehb | E5284_RS10840 | Not Available | Positive | 2283400 - 2283996 | 22273.5 |
| duf3313 domain-containing protein | E5284_RS10845 | Not Available | Positive | 2284165 - 2284836 | 24621.7 |
| dmt family transporter | E5284_RS10850 | Not Available | Negative | 2284879 - 2285787 | 33283.5 |
| helix-turn-helix domain-containing protein | E5284_RS10855 | Not Available | Positive | 2285977 - 2286846 | 32433.3 |
| benzoate/h(+) symporter bene family transporter | E5284_RS10860 | Not Available | Negative | 2286829 - 2287995 | 40242.5 |
| helix-turn-helix domain-containing protein | E5284_RS10865 | Not Available | Positive | 2288101 - 2288637 | 19835.5 |
| peptidase u32 family protein | E5284_RS10870 | Not Available | Positive | 2288716 - 2290677 | 72742.1 |
| duf2554 family protein | E5284_RS10875 | Not Available | Negative | 2290681 - 2290911 | 8753.24 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

