Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS10780 | Not Available | Negative | 2272483 - 2273001 | 19366.2 |
| hypothetical protein | E5284_RS10785 | Not Available | Negative | 2273090 - 2274115 | 35450.0 |
| hypothetical protein | E5284_RS10790 | Not Available | Negative | 2274180 - 2274365 | 6885.45 |
| hypothetical protein | E5284_RS10795 | Not Available | Negative | 2274520 - 2274732 | 7867.53 |
| hypothetical protein | E5284_RS10800 | Not Available | Negative | 2274744 - 2275073 | 12213.1 |
| voc family protein | E5284_RS10805 | Not Available | Positive | 2275672 - 2277015 | 50804.3 |
| glucan biosynthesis protein d | E5284_RS10810 | Not Available | Positive | 2277209 - 2278864 | 62783.2 |
| ydch family protein | E5284_RS10815 | Not Available | Positive | 2279032 - 2279256 | 8742.51 |
| alanine racemase | E5284_RS10820 | Not Available | Negative | 2279323 - 2280549 | 44347.7 |
| 50s ribosomal protein l7/l12-serine acetyltransferase | E5284_RS10825 | Not Available | Positive | 2280768 - 2281313 | 21144.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

